LinkedOmics
    Analyzing multi-omics data within and acr oss 32 cancer types

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Datasets for CPTAC - Breast invasive carcinoma prospective cohort

OMICS Dataset Link Level Unit Samples Atrributes File type
Clinical Download Clinical Phenotype 122 29 tsi
SCNV (Gene level, Tumor, log2) Download Gene Copy Number Change (GISTIC2, Log2ratio) 122 23692 cct
Mutation (Gene level, Tumor) Download Gene Mutation Status (GATK) 122 10940 cbt
Acetylproteome (Site level, Tumor) Download Acetylation Sit Expression (TMT, Log2ratio) 122 9842 cct
Phosphoproteome (Gene level, Tumor) Download Gene Expression (TMT, Log2ratio) 122 7170 cct
Phosphoproteome (Site level, Tumor) Download Phosphosite Expression (TMT, Log2ratio) 122 29776 cct
Proteome (Gene level, TMT Log Ratio, Tumor) Download Gene Expression (TMT, Log2ratio) 122 12621 cct
Acetylproteome (Gene level, Tumor) Download Gene Expression (TMT, Log2ratio) 122 2915 cct
RNAseq (Gene level, Tumor) Download Gene Expression (log2(FPKM), normalized by gene median) 122 23121 cct