LinkedOmics
    Analyzing multi-omics data within and acr oss 32 cancer types

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Datasets for CPTAC - Head-and-neck squamous cell carcinoma cohort

OMICS Dataset Link Level Unit Samples Atrributes File type
Clinical Download Clinical Phenotype 108 40 tsi
SCNV (Gene level, Tumor, log2) Download Gene Copy Number Change (GISTIC2, Log2ratio) 109 59013 cct
SCNV (Gene level, Tumor, threshold) Download Gene Copy Number Change (GISTIC2, threshold) 109 27080 cct
SCNV (Segment level, Tumor) Download Segment Copy Number Change (GISTIC2, Log2ratio) 109 - cct
Mutation (Gene level, Tumor) Download Gene Mutation Status (GATK) 110 9333 cbt
Mutation (Site level, Tumor) Download Site Mutation Status (GATK) 110 17856 cbt
Phosphoproteome (Gene level, Normal) Download Gene Expression (TMT, Log2ratio) 63 6359 cct
Phosphoproteome (Gene level, Tumor) Download Gene Expression (TMT, Log2ratio) 109 6359 cct
Phosphoproteome (Peptide level, Normal) Download Peptide Expression (TMT, Log2ratio) 63 97210 cct
Phosphoproteome (Peptide level, Tumor) Download Peptide Expression (TMT, Log2ratio) 108 97210 cct
Phosphoproteome (Site level, Normal) Download Site Expression (TMT, Log2ratio) 62 21057 cct
Phosphoproteome (Site level, Tumor) Download Site Expression (TMT, Log2ratio) 108 21057 cct
Proteome (Gene level, TMT Log Ratio, Normal) Download Gene Expression (TMT, Log2ratio) 63 9666 cct
Proteome (Gene level, TMT Log Ratio, Tumor) Download Gene Expression (TMT, Log2ratio) 109 9666 cct
RNAseq (Gene level, Normal) Download Gene Expression (log2 RSEM, upper-quartile normalized) 53 38456 cct
RNAseq (Gene level, Tumor) Download Gene Expression (log2 RSEM, upper-quartile normalized) 109 38456 cct
MicroRNA (Gene level, Normal) Download Gene Expression (log2 RPM) 58 2468 cct
MicroRNA (Gene level, Tumor) Download Gene Expression (log2 RPM) 109 2468 cct
Circular RNA (Normal) Download Gene Expression (log2 RSEM, upper-quartile normalized) 53 3719 cct
Circular RNA (Tumor) Download Gene Expression (log2 RSEM, upper-quartile normalized) 109 3719 cct
Methylation (Gene level, Normal) Download Gene EPIC betaValue 40 13116 cct
Methylation (Gene level, Tumor) Download Gene EPIC betaValue 104 13116 cct
Methylation (Probe level, Normal) Download Probe EPIC betaValue 42 835683 cct
Methylation (Probe level, Tumor) Download Probe EPIC betaValue 105 835683 cct