LinkedOmics
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Datasets for Kidney renal papillary cell carcinoma (TCGA-KIRP)

OMICS Dataset Link Description Level Unit Samples Atrributes File type
Clinical Download Clinical annotation Clinical Phenotype 291 13 tsi
Methylation (CpG-site level, HM27) Download Methylation data of tumor samples at CpG-site level (Beta values, Illumina HM27 platform) CpG Beta Values (Val-0.5) 16 25819 cct
Methylation (Gene level, HM27) Download Methylation data of tumor samples at Gene level (Beta values, Illumina HM27 platform) gene Beta Values (Val-0.5) 16 13807 cct
Methylation (CpG-site level, HM450K) Download Methylation data of tumor samples at CpG-site level (Beta values, Illumina HM450K platform) CpG Beta Values (Val-0.5) 275 336276 cct
Methylation (Gene level, HM450K) Download Methylation data of tumor samples at Gene level (Beta values, Illumina HM450K platform) gene Beta Values (Val-0.5) 275 20114 cct
miRNA (GA, miRgene level) Download miRNA expression for tumor samples (Illumina GenomeAnalyzer platform, miRgene-level, Normalized, RPM) miRgene Expression (RPM, Log2(Val+1)) 16 487 cct
miRNA (HiSeq, miRgene level) Download miRNA expression for tumor samples (Illumina HiSeq platform, miRgene-level, Normalized, RPM) miRgene Expression (RPM, Log2(Val+1)) 291 769 cct
Mutation (Gene level) Download Somatic mutations at gene level SNVs gene Mutation Status (MutSig2CV) 282 1254 cbt
Mutation (Site level) Download Somatic mutations at site level SNVs mutationsite Mutation Status (MutSig2CV) 282 3 cbt
RPPA (Analyte Level) Download Reverse phase protein array (RPPA) expression normalized (Analyte-level) analyte Expression (Signal) 215 182 cct
RPPA (Gene Level) Download Reverse phase protein array (RPPA) expression normalized (Gene-level) gene Expression (Signal) 215 149 cct
RNAseq (HiSeq, Gene level) Download RNAseq data normalized counts (Illumina HiSeq platform, Gene-level, Normalized log2 RPKM) gene Expression (RSEM, Log2(Val+1)) 290 20024 cct
SCNV (Focal level, log-ratio) Download Copy number change at the focal level, GISTIC2 log ratio focal Copy Number Change (GISTIC2, Log2ratio) 288 28 cct
SCNV (Focal level, Thresholded) Download Copy number change at the focal level, GISTIC2 thresholded focal Copy Number Change (GISTIC2, Log2ratio) 288 7 cgt
SCNV (Gene level, log-ratio) Download Copy number change at the gene level, GISTIC2 log ratio format gene Copy Number Change (GISTIC2, Log2ratio) 288 24776 cct
SCNV (Gene level, Thresholded) Download Copy number change at the gene level, GISTIC2 thresholded gene Copy Number Change (GISTIC2, Log2ratio) 288 24776 cgt

  • *tsi - Mixed data matrix file
  • *cct - continuous data matrix file
  • *cbt - binary data matrix file
  • *cgt - categorical data matrix file