| Clinical |
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Clinical annotation |
Clinical |
Phenotype |
591 |
9 |
tsi |
| Glycoproteome (Site level) |
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Glycoproteome at site level data given in log-ratio |
glycosite |
Expression (CDAP, Log2ratio) |
122 |
1219 |
cct |
| Glycoproteome (Gene level) |
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Glycoproteome at Gene level data given in log-ratio |
glycogene |
Expression (CDAP, Log2ratio) |
122 |
516 |
cct |
| Methylation (CpG-site level, HM27) |
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Methylation data for tumor samples at Site level (Illumina HM27 platform, Beta values) |
CpG |
Beta Values (Val-0.5) |
582 |
25617 |
cct |
| Methylation (Gene level, HM27) |
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Methylation data of tumor samples at Gene level (Illumina HM27 platform, Beta values) |
gene |
Beta Values (Val-0.5) |
582 |
13772 |
cct |
| Methylation (CpG-site level, HM450K) |
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Methylation data of tumor samples at CpG-site level (Illumina HM450K platform, Beta values) |
CpG |
Beta Values (Val-0.5) |
10 |
337082 |
cct |
| Methylation (Gene level, HM450K) |
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Methylation data of tumor samples at Gene level Illumina HM450K platform, Beta values) |
gene |
Beta Values (Val-0.5) |
10 |
20120 |
cct |
| miRNA (miRgene level) |
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miRNA expression for tumor samples (miRgene-level, Normalized, RPM) |
miRgene |
Expression (RPM, Log2(Val+1)) |
453 |
588 |
cct |
| Mutation (Gene level) |
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Somatic mutations at gene level SNVs |
gene |
Mutation Status (MutSig2CV) |
465 |
2205 |
cbt |
| Mutation (Site level) |
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Somatic mutations at site level SNVs |
mutationsite |
Mutation Status (MutSig2CV) |
465 |
29 |
cbt |
| Phosphoproteome (Site level) |
Download |
Phosphoproteome at site level data given in log-ratio (normalized) |
phosphosite |
Expression (CDAP, Log2ratio) |
69 |
4119 |
cct |
| Phosphoproteome (Gene level) |
Download |
Phosphoproteome at Gene level data given in log-ratio (normalized) |
phosphogene |
Expression (CDAP, Log2ratio) |
69 |
2059 |
cct |
| Proteome (JHU, Gene level) |
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Proteome data for tumor samples log-ratio normalized (from Johns Hopkins University, Gene-level) |
gene |
Expression (CDAP, Log2ratio) |
122 |
7625 |
cct |
| Proteome (PNNL, Gene level) |
Download |
Proteome data for tumor samples log-ratio normalized (Gene-level) |
gene |
Expression (CDAP, Log2ratio) |
84 |
6475 |
cct |
| RPPA (Analyte level) |
Download |
Reverse phase protein array (RPPA) expression normalized (Analyte-level) |
analyte |
Expression (Signal) |
425 |
193 |
cct |
| RPPA (Gene level) |
Download |
Reverse phase protein array (RPPA) expression normalized (Gene-level) |
gene |
Expression (Signal) |
425 |
159 |
cct |
| RNAseq (GA, Gene level) |
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RNAseq data normalized counts (Illumina GenomeAnalyzer platform, Gene-level, RPKM) |
gene |
Expression (RSEM, Log2(Val+1)) |
569 |
6426 |
cct |
| RNAseq (HiSeq, Gene level) |
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RNAseq data normalized counts (Illumina HiSeq platform, Gene-level, RPKM) |
gene |
Expression (RSEM, Log2(Val+1)) |
303 |
20032 |
cct |
| SCNV (Focal level, log-ratio) |
Download |
Copy number change at the focal level, GISTIC2 log ratio |
focal |
Copy Number Change (GISTIC2, Log2ratio) |
579 |
72 |
cct |
| SCNV (Focal level, Thresholded) |
Download |
Copy number change at the focal level, GISTIC2 thresholded |
focal |
Copy Number Change (GISTIC2, Log2ratio) |
579 |
33 |
cgt |
| SCNV (Gene level, log-ratio) |
Download |
Copy number change at the gene level, GISTIC2 log ratio format |
gene |
Copy Number Change (GISTIC2, Log2ratio) |
579 |
24776 |
cct |
| SCNV (Gene level, Thresholded) |
Download |
Copy number change at the gene level, GISTIC2 thresholded |
gene |
Copy Number Change (GISTIC2, Log2ratio) |
579 |
24776 |
cgt |
