| SCNV (Gene level, Thresholded) |
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Copy number change at the gene level, GISTIC2 thresholded |
gene |
Copy Number Change (GISTIC2, Thresholded) |
105 |
25187 |
cct |
| SCNV (Gene level, log ratio) |
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Copy number change at the gene level, GISTIC2 log ratio |
gene |
Copy Number Change (GISTIC2, Log2ratio) |
105 |
25187 |
cct |
| RNAseq (HiSeq, Gene level) |
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RNAseq data RSEM upper-quartile normalized (Illumina HiSeq platform, Gene-level) |
gene |
Expression (RSEM-UQ, Log2(Val+1)) |
106 |
13482 |
cct |
| Proteome (PNNL, Gene level, Tumor TMT Unshared Log Ratio) |
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Proteome data for tumor samples log-ratio normalized (TMT data for Tumor samples, from Pacific Northwest National Laboratory, Gene-level, Unshared log-ratio) |
gene |
Expression (TMT, Log2ratio) |
97 |
8067 |
cct |
| Proteome (PNNL, Gene level, Normal TMT Unshared Log Ratio) |
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Proteome data for normal samples log-ratio normalized (TMT data for matched Normal samples, from Pacific Northwest National Laboratory, Gene-level, Unshared log-ratio) |
gene |
Expression (TMT, Log2ratio) |
100 |
8067 |
cct |
| Proteome (PNNL, Gene level) |
Download |
Proteome data for tumor-normal samples log-ratio normalized (from Pacific Northwest National Laboratory, Gene-level) |
gene |
Expression (TMT, Log2ratio) |
96 |
6422 |
cct |
| Phosphoproteome (Site level) |
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Phosphoproteome at site level data given in log-ratio (normalized) |
phosphosite |
Expression (TMT, Log2ratio) |
96 |
31339 |
cct |
| Phosphoproteomics (Tumor) |
Download |
Phosphoproteome at site level data given in log-ratio (normalized) |
phosphosite |
Expression (TMT, Log2ratio) |
97 |
31339 |
cct |
| Phosphoproteomics (Normal) |
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Matched Normal Phosphpoproteomics TMT data in LogRatio format (normalized) |
phosphosite |
Expression (TMT, Log2ratio) |
100 |
31339 |
cct |
| Mutation (Gene level) |
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Somatic mutations includes SNVs and Indels |
gene |
Mutation Status (GATK) |
106 |
15174 |
cbt |
| Mutation (Site level) |
Download |
Somatic mutations includes SNVs and Indels |
site |
Mutation Status (GATK) |
106 |
86026 |
cbt |
| Clinical |
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Clinical annotation |
Clinical |
Phenotype |
110 |
27 |
tsi |
| miRNA (Gene level) |
Download |
miRNA expression for tumor samples (Normalized, RPM) |
miRgene |
Expression (RPM, Log2(Val+1)) |
105 |
989 |
cct |
| Proteome (VU, Gene level, Label-free Unshared Counts) |
Download |
Proteome data for tumor samples (from Vandelbilt University, Gene-level) |
gene |
Expression (LF, Counts) |
100 |
3388 |
cct |
| Mutation raw file (Somatic and MSIndel) |
Download |
Mutation data for tumor samples with protein altering events |
site |
Mutation status (GATK,MSMutect) |
106 |
132730 |
txt |
| Annotated mutation |
Download |
Annotated mutation data |
gene |
Varible (Oncotator) |
NA |
NA |
maf |
| SCNV (Segment level) |
Download |
Copy number data at the segment level |
segment |
Copy Number Change (Log2ratio) |
105 |
NA |
txt |
