| Clinical |
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Clinical annotation |
Clinical |
Phenotype |
307 |
13 |
tsi |
| Methylation (CpG-site level, HM450K) |
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Methylation data of tumor samples at CpG-site level (Beta values, Illumina HM450K platform) |
CpG |
Beta Values (Val-0.5) |
307 |
335343 |
cct |
| Methylation (Gene level, HM450K) |
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Methylation data of tumor samples at Gene level (Beta values, Illumina HM450K platform) |
gene |
Beta Values (Val-0.5) |
307 |
20108 |
cct |
| miRNA (Gene level) |
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miRNA expression for tumor samples (Normalized, RPM) |
miRgene |
Expression (RPM, Log2(Val+1)) |
307 |
812 |
cct |
| Mutation (Gene level) |
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Somatic mutations at gene level SNVs |
gene |
Mutation Status (MutSig2CV) |
190 |
1125 |
cbt |
| Mutation (Site level) |
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Somatic mutations at site level SNVs |
mutationsite |
Mutation Status (MutSig2CV) |
190 |
5 |
cbt |
| RPPA (Analyte Level) |
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Reverse phase protein array (RPPA) expression normalized (Analyte-level) |
analyte |
Expression (Signal) |
173 |
182 |
cct |
| RPPA (Gene Level) |
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Reverse phase protein array (RPPA) expression normalized (Gene-level) |
gene |
Expression (Signal) |
173 |
151 |
cct |
| RNAseq (HiSeq, Gene level) |
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RNAseq data normalized counts (Illumina HiSeq platform, Gene-level, Normalized log2 RPKM) |
gene |
Expression (RSEM, Log2(Val+1)) |
304 |
19904 |
cct |
| SCNV (Focal level, log-ratio) |
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Copy number change at the focal level, GISTIC2 log ratio |
focal |
Copy Number Change (GISTIC2, Log2ratio) |
295 |
62 |
cct |
| SCNV (Gene level, log-ratio) |
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Copy number change at the gene level, GISTIC2 log ratio format |
gene |
Copy Number Change (GISTIC2, Log2ratio) |
295 |
24776 |
cct |
| SCNV (Focal level, Thresholded) |
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Copy number change at the focal level, GISTIC2 thresholded |
focal |
Copy Number Change (GISTIC2, Log2ratio) |
295 |
26 |
cgt |
| SCNV (Gene level, Thresholded) |
Download |
Copy number change at the gene level, GISTIC2 thresholded |
gene |
Copy Number Change (GISTIC2, Log2ratio) |
295 |
24776 |
cgt |
