LinkedOmics
    Analyzing multi-omics data within and across 32 cancer types

Data Download Portal

<- Explore LinkedOmics

Datasets for Glioblastoma multiforme (TCGA-GBM)

OMICS Dataset Link Description Level Unit Samples Atrributes File type
Clinical Download Clinical annotation Clinical Phenotype 595 9 tsi
Methylation (CpG-site level, HM27) Download Methylation data of tumor samples at CpG-site level (Beta values, Illumina HM27 platform) CpG Beta Values (Val-0.5) 285 25634 cct
Methylation (Gene level, HM27) Download Methylation data of tumor samples at Gene level (Beta values, Illumina HM27 platform) gene Beta Values (Val-0.5) 285 13774 cct
Methylation (CpG-site level, HM450K) Download Methylation data of tumor samples at CpG-site level (Beta values, Illumina HM450K platform) CpG Beta Values (Val-0.5) 140 336396 cct
Methylation (Gene level, HM450K) Download Methylation data of tumor samples at Gene level (Beta values, Illumina HM450K platform) gene Beta Values (Val-0.5) 140 20114 cct
Mutation (Gene level) Download Somatic mutations at gene level SNVs (Current, version date: 1/28/2016) gene Mutation Status (MutSig2CV) 283 1468 cbt
Mutation (Gene level) Download Somatic mutations at gene level SNVs (Version date: 8/21/2015) gene Mutation Status (MutSig2CV) 283 1468 cbt
Mutation (Site level) Download Somatic mutations at site level SNVs mutationsite Mutation Status (MutSig2CV) 283 28 cbt
RPPA (Analyte Level) Download Reverse phase protein array (RPPA) expression normalized (Analyte-level) analyte Expression (Signal) 233 192 cct
RPPA (Gene Level) Download Reverse phase protein array (RPPA) expression normalized (Gene-level) gene Expression (Signal) 233 158 cct
RNAseq (GA, Gene level) Download RNAseq data normalized counts (Illumina GenomeAnalyzer platform, Gene-level, RPKM) gene Expression (RSEM, Log2(Val+1)) 528 12042 cct
RNAseq (HiSeq, Gene level) Download RNAseq data normalized counts (Illumina HiSeq platform, Gene-level, RPKM) gene Expression (RSEM, Log2(Val+1)) 153 19660 cct
SCNV (Focal level, log-ratio) Download Copy number change at the focal level, GISTIC2 log ratio focal Copy Number Change (GISTIC2, Log2ratio) 577 63 cct
SCNV (Focal level, Thresholded) Download Copy number change at the focal level, GISTIC2 thresholded focal Copy Number Change (GISTIC2, Log2ratio) 577 23 cgt
SCNV (Gene level, log-ratio) Download Copy number change at the gene level, GISTIC2 log ratio format gene Copy Number Change (GISTIC2, Log2ratio) 577 24776 cct
SCNV (Gene level, Thresholded) Download Copy number change at the gene level, GISTIC2 thresholded gene Copy Number Change (GISTIC2, Log2ratio) 577 24776 cgt

  • *tsi - Mixed data matrix file
  • *cct - continuous data matrix file
  • *cbt - binary data matrix file
  • *cgt - categorical data matrix file