LinkedOmics
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Datasets for Kidney renal clear cell carcinoma (TCGA-KIRC)

OMICS Dataset Link Description Level Unit Samples Atrributes File type
Clinical Download Clinical annotation Clinical Phenotype 537 13 tsi
Methylation (CpG-site level, HM27) Download Methylation data of tumor samples at CpG-site level (Beta values, Illumina HM27 platform) CpG Beta Values (Val-0.5) 219 25455 cct
Methylation (Gene level, HM27) Download Methylation data of tumor samples at Gene level (Beta values, Illumina HM27 platform) gene Beta Values (Val-0.5) 219 13738 cct
Methylation (CpG-site level, HM450K) Download Methylation data of tumor samples at CpG-site level (Beta values, Illumina HM450K platform) CpG Beta Values (Val-0.5) 319 336633 cct
Methylation (Gene level, HM450K) Download Methylation data of tumor samples at Gene level (Beta values, Illumina HM450K platform) gene Beta Values (Val-0.5) 319 20115 cct
miRNA (GA, miRgene level) Download miRNA expression for tumor samples (Illumina GenomeAnalyzer platform, miRgene-level, Normalized, RPM) miRgene Expression (RPM, Log2(Val+1)) 267 718 cct
miRNA (isoform level) Download miRNA isoform expression for tumor samples (Normalized, RPM) miRisoform Expression (RPM, Log2(Val+1)) 267 15956 cct
miRNA (HiSeq, miRgene level) Download miRNA expression for tumor samples (Illumina HiSeq platform, miRgene-level, Normalized, RPM) miRgene Expression (RPM, Log2(Val+1)) 254 729 cct
Mutation (Gene level) Download Somatic mutations at gene level SNVs gene Mutation Status (MutSig2CV) 407 710 cbt
Mutation (Site level) Download Somatic mutations at site level SNVs mutationsite Mutation Status (MutSig2CV) 435 17 cbt
RPPA (Analyte Level) Download Reverse phase protein array (RPPA) expression normalized (Analyte-level) analyte Expression (Signal) 478 201 cct
RPPA (Gene Level) Download Reverse phase protein array (RPPA) expression normalized (Gene-level) gene Expression (Signal) 478 168 cct
RNAseq (GA, Gene level) Download RNAseq data normalized counts (Illumina GenomeAnalyzer platform, Gene-level, RPKM) gene Expression (RSEM, Log2(Val+1)) 72 6149 cct
RNAseq (HiSeq, Gene level) Download RNAseq data normalized counts (Illumina HiSeq platform, Gene-level, RPKM) gene Expression (RSEM, Log2(Val+1)) 533 20159 cct
SCNV (Focal level, log-ratio) Download Copy number change at the focal level, GISTIC2 log ratio focal Copy Number Change (GISTIC2, Log2ratio) 528 28 cct
SCNV (Focal level, Thresholded) Download Copy number change at the focal level, GISTIC2 thresholded focal Copy Number Change (GISTIC2, Log2ratio) 528 10 cgt
SCNV (Gene level, log-ratio) Download Copy number change at the gene level, GISTIC2 log ratio format gene Copy Number Change (GISTIC2, Log2ratio) 528 24776 cct
SCNV (Gene level, Thresholded) Download Copy number change at the gene level, GISTIC2 thresholded gene Copy Number Change (GISTIC2, Log2ratio) 528 24776 cgt

  • *tsi - Mixed data matrix file
  • *cct - continuous data matrix file
  • *cbt - binary data matrix file
  • *cgt - categorical data matrix file