LinkedOmics
    Analyzing multi-omics data within and across 32 cancer types

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Datasets for Stomach and Esophageal carcinoma (TCGA-STES)

OMICS Dataset Link Description Level Unit Samples Atrributes File type
Clinical Download Clinical annotation Clinical Phenotype 628 11 tsi
Methylation (CpG-site level, HM27) Download Methylation data of tumor samples at Gene level (Beta values, Illumina HM27 platform) CpG Beta Values (Val-0.5) 48 25749 cct
Methylation (Gene level, HM27) Download Methylation data of tumor samples at CpG-site level (Beta values, Illumina HM27 platform) gene Beta Values (Val-0.5) 48 13795 cct
Methylation (CpG-site level, HM450K) Download Methylation data of tumor samples at CpG-site level (Beta values, Illumina HM450K platform) CpG Beta Values (Val-0.5) 580 335139 cct
Methylation (Gene level, HM450K) Download Methylation data of tumor samples at Gene level (Beta values, Illumina HM450K platform) gene Beta Values (Val-0.5) 580 20100 cct
miRNA (GA, miRgene level) Download miRNA expression for tumor samples (Illumina GenomeAnalyzer platform, miRgene-level, Normalized, RPM) miRgene Expression (RPM, Log2(Val+1)) 47 650 cct
miRNA (HiSeq, miRgene level) Download miRNA expression for tumor samples (Illumina HiSeq platform, miRgene-level, Normalized, RPM) miRgene Expression (RPM, Log2(Val+1)) 573 828 cct
Mutation (Gene level) Download Somatic mutations at gene level SNVs gene Mutation Status (MutSig2CV) 578 14952 cbt
Mutation (Site level) Download Somatic mutations at site level SNVs mutationsite Mutation Status (MutSig2CV) 578 1308 cbt
RPPA (Analyte Level) Download Reverse phase protein array (RPPA) expression normalized (Analyte-level) analyte Expression (Signal) 483 179 cct
RPPA (Gene Level) Download Reverse phase protein array (RPPA) expression normalized (Gene-level) gene Expression (Signal) 483 150 cct
RNAseq (HiSeq, Gene level) Download RNAseq data normalized counts (Illumina HiSeq platform, Gene-level, Normalized log2 RPKM) gene Expression (RSEM, Log2(Val+1)) 599 20244 cct
SCNV (Focal level, log-ratio) Download Copy number change at the focal level, GISTIC2 log ratio focal Copy Number Change (GISTIC2, Log2ratio) 625 92 cct
SCNV (Focal level, Thresholded) Download Copy number change at the focal level, GISTIC2 thresholded focal Copy Number Change (GISTIC2, Log2ratio) 625 38 cgt
SCNV (Gene level, log-ratio) Download Copy number change at the gene level, GISTIC2 log ratio format gene Copy Number Change (GISTIC2, Log2ratio) 625 24776 cct
SCNV (Gene level, Thresholded) Download Copy number change at the gene level, GISTIC2 thresholded gene Copy Number Change (GISTIC2, Log2ratio) 625 24776 cgt

  • *tsi - Mixed data matrix file
  • *cct - continuous data matrix file
  • *cbt - binary data matrix file
  • *cgt - categorical data matrix file