LinkedOmics
    Analyzing multi-omics data within and across 32 cancer types

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Datasets for Thymoma (TCGA-THYM)

OMICS Dataset Link Description Level Unit Samples Atrributes File type
Clinical Download Clinical annotation Clinical Phenotype 124 8 tsi
Methylation (CpG-site level, HM450K) Download Methylation data of tumor samples at CpG-site level (Beta values, Illumina HM450K platform) CpG Beta Values (Val-0.5) 124 337049 cct
Methylation (Gene level, HM450K) Download Methylation data of tumor samples at Gene level (Beta values, Illumina HM450K platform) gene Beta Values (Val-0.5) 124 20120 cct
miRNA (Gene level) Download miRNA expression for tumor samples (Normalized, RPM) miRgene Expression (RPM, Log2(Val+1)) 124 763 cct
Mutation (Gene level) Download Somatic mutations at gene level SNVs gene Mutation Status (MutSig2CV) 119 19 cbt
Mutation (Site level) Download Somatic mutations at site level SNVs mutationsite Mutation Status (MutSig2CV) 118 2 cbt
RPPA (Analyte Level) Download Reverse phase protein array (RPPA) expression normalized (Analyte-level) analyte Expression (Signal) 90 182 cct
RPPA (Gene Level) Download Reverse phase protein array (RPPA) expression normalized (Gene-level) gene Expression (Signal) 90 151 cct
RNAseq (HiSeq, Gene level) Download RNAseq data normalized counts (Illumina HiSeq platform, Gene-level, Normalized log2 RPKM) gene Expression (RSEM, Log2(Val+1)) 120 19689 cct
SCNV (Focal level, log-ratio) Download Copy number change at the focal level, GISTIC2 log ratio focal Copy Number Change (GISTIC2, Log2ratio) 123 18 cct
SCNV (Focal level, Thresholded) Download Copy number change at the focal level, GISTIC2 thresholded focal Copy Number Change (GISTIC2, Log2ratio) 123 7 cgt
SCNV (Gene level, log-ratio) Download Copy number change at the gene level, GISTIC2 log ratio format gene Copy Number Change (GISTIC2, Log2ratio) 123 24776 cct
SCNV (Gene level, Thresholded) Download Copy number change at the gene level, GISTIC2 thresholded gene Copy Number Change (GISTIC2, Log2ratio) 123 23920 cgt

  • *tsi - Mixed data matrix file
  • *cct - continuous data matrix file
  • *cbt - binary data matrix file
  • *cgt - categorical data matrix file